February 1999. Both ceremonies disappeared before Mikiya Kuroiri. And a continuous hunting murder case that recurs to match it. Three years ago, he called himself a murderer. Mikiya vowed to continue believing. Mikiya begins investigating the murder case to prove the innocence of the ceremony. Meanwhile, Mikiya reunited with a senior high school senior, Sakuji Shirazumi, triggered by a drug case.

July 1998 - After a group of delinquents is found dead in their hangout place with all their limbs twisted and torn off, Aozaki Touko receives a request to find the murderer and asks Shiki for help. The main suspect is Asagami Fujino; a girl who was the boys' plaything until recently, who Shiki believes to be "one of her kind".

June 1998: After spending two years in a coma caused by a traffic accident, Shiki Ryougi awakens with amnesia. She is visited by Touko Aozaki, a wizard and proprietor of a studio called Garan no Dou. Shiki has lost not only the memory of her accident, but also any real sense that she's even alive. Strangely, enigmatic beings begin to attack her...

A side story of the original Kara no Kyōkai - the Garden of sinners movie series divided into 2 parts. In the first part, Shizune Seo, who finds her life too predictable due to her precognition, and Mitsuru‎ Kamekura, who uses his precognition to be a professional bomber, meet Mikiya and Shiki, respectively, and their futures begin to change. In the second part, 10 years after the original series, Shiki and Mikiya's daughter, Mana Ryōgi, spends a day with Mitsuru.

Before the release of the final 7th movie, a remix work "Kara no Kyoukai Remix-Gate of seventh heaven-" comes out in theaters on March 14, 2009. This remix collection extracts the key themes and scenes from first six movies. The hour long movie is organized in chronological order, beginning from the 2nd movie, followed by the 4th, 3rd, 1st, 5th and 6th. It's a mixture of mostly existing scenes, and some new scenes.

Mikiya Kokutou gives Shiki Ryougi a cat to watch, as he will be away for a little while. Though Shiki protests, he leaves the cat anyway, and Shiki is stuck trying to understand her new feline companion. But as luck would have it, the cat seems to have taken a liking to Mikiya and misses him. Later in another part of the city, Ririsu Miyazuki visits the place where her dear friend committed suicide. She intends to end her life as well, but she meets Fujino Asagami, a blind classmate with a traumatic past. Though the two girls don't have much in common, Asagami reminds Miyazuki of her lost friend and helps her understand her pain. Two months later, Mikiya elects to celebrate New Year's with Shiki instead of his family, which makes his sister Azaka very upset, leading to her spending the holiday with her school friends. As the snow begins to fall, Mikiya reflects on what he wishes for most of all: that Shiki's life be filled with happiness.

Rune Ballot is a down-and-out teen prostitute in Mardock City. One day, she's picked up by an ambitious casino manager named Shell who gives her everything she could want. Renewed by a false innocence, a false past, and now the false life Shell has given her, Ballot feels grateful. However, she can't help but be curious about why he's done so much for her, so she does some research about his past on a computer. This turns out to be a mistake which will change her life greatly. When Shell finds out what she's done, he attempts to burn her to death by blowing up her car.

A day in the life of an alcoholic. With the help of his girlfriend Krysia, Kuba attempts to regain control of his life.

Jiantan is a young boy who has to leave Xi'an after the death of his mother to go deep into the Tibetan prairies to start living with the father he barely remembers. His dad, LaGeBa, is a busy doctor who decided to depart from the city and reside in Tibet where he is the essential physician of the poor community he lives in. To help his father, Jiantan has to learn how to herd sheep. While trying to learn his new responsibility, he is saved by a stray gold-colored Tibetan Mastiff. Both Jiantan and the big dog help each other as they try to adjust to this new environment.